A dark sky had fallen over Nantucket, Mass., on Saturday evening when President Biden left church alongside his family after his final Thanksgiving as president.

Inside a borrowed vacation compound earlier in the week, with its views of the Nantucket Harbor, Mr. Biden had met with his wife, Jill Biden, and his son Hunter Biden to discuss a decision that had tormented him for months. The issue: a pardon that would clear Hunter of years of legal trouble, something the president had repeatedly insisted he would not do.

Support for pardoning Hunter Biden had been building for months within the family, but external forces had more recently weighed on Mr. Biden, who watched warily as President-elect Donald J. Trump picked loyalists for his administration who promised to bring political and legal retribution to Mr. Trump’s enemies.

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